PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.042000.1
Common NameCsa_3G047800, LOC101204640
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family NF-YB
Protein Properties Length: 185aa    MW: 19536.6 Da    PI: 5.3178
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.042000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB1794.4e-5619114297
           NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelege 96 
                     re+dr+lPianv+rimkk+lP+nakiskdaketvqecvsefisfvt+easdkc++ekrktingddllwa+atlGfedyv+plk+yl+++re+ege
  Cucsa.042000.1  19 REHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFISFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGE 113
                     799*******************************************************************************************9 PP

           NF-YB  97 k 97 
                     +
  Cucsa.042000.1 114 R 114
                     7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.1E-5114127IPR009072Histone-fold
SuperFamilySSF471132.79E-3922124IPR009072Histone-fold
PfamPF008088.1E-282488IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006152.4E-205270No hitNo description
PROSITE patternPS0068505571IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006152.4E-207189No hitNo description
PRINTSPR006152.4E-2090108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MADSDNDSGG GYQKSPSPRE HDRLLPIANV GRIMKKALPG NAKISKDAKE TVQECVSEFI  60
SFVTGEASDK CHNEKRKTIN GDDLLWAMAT LGFEDYVDPL KLYLQRFREI EGERTTLASR  120
DSASSAANSA AAGNSGFFDG GGEFGGAGGS GMGMGMTTTM PPNVYGSNGP RWDGPGFSTT  180
GRPR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_B5e-4817109294NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A5e-4817109294NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818600.0LN681860.1 Cucumis melo genomic scaffold, anchoredscaffold00021.
GenBankLN7132600.0LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004148262.11e-135PREDICTED: nuclear transcription factor Y subunit B-3-like
SwissprotO233102e-67NFYB3_ARATH; Nuclear transcription factor Y subunit B-3
TrEMBLA0A0A0L4U41e-135A0A0A0L4U4_CUCSA; Uncharacterized protein
STRINGGLYMA18G08620.11e-67(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59134150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14540.16e-68nuclear factor Y, subunit B3
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]